Yoichi Ishida. 2020. “In Dialectical Tension: Realist and Instrumentalist Attitudes in Scientific Practice.” Synthese 197, no. 6 (June): 2665–2694. (First published online in 2018.)
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Yoichi Ishida and Alirio Rosales. 2020. “The Origins of the Stochastic Theory of Population Genetics: The Wright-Fisher Model.” Studies in History and Philosophy of Biological and Biomedical Sciences 79 (February): 101226.
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Yoichi Ishida. 2017. “Sewall Wright, Shifting Balance Theory, and the Hardening of the Modern Synthesis.” Studies in History and Philosophy of Biological and Biomedical Sciences 61 (February): 1–10.
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Frank V. Marcoline, Yoichi Ishida, Joseph A. Mindell, Smita Nayak, and Michael Grabe. 2016. “A Mathematical Model of Osteoclast Acidification During Bone Resorption.” Bone 93 (December): 167–180.
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Yoichi Ishida, Smita Nayak, Joseph A. Mindell, and Michael Grabe. 2013. “A Model of Lysosomal pH Regulation.” Journal of General Physiology 141, no. 6 (June): 705–720.
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Yoichi Ishida. 2009. “Sewall Wright and Gustave Malécot on Isolation by Distance.” Philosophy of Science 76, no. 5 (December): 784–796.
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David W. Zeh, Jeanne A. Zeh, and Yoichi Ishida. 2009. “Transposable Elements and an Epigenetic Basis for Punctuated Equilibria.” BioEssays 31, no. 7 (July): 715–726.
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Yoichi Ishida. 2007. “Patterns, Models, and Predictions: Robert MacArthur’s Approach to Ecology.” Philosophy of Science 74, no. 5 (December): 642–653.
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